petlx
Excel .xls (xlrd)
Excel .xlsx (openpyxl)
SQL (SQLAlchemy)
Arrays (numpy)
DataFrames (pandas)
HDF5 (pytables)
iPython
Intervals (bx-python)
Tabix (pysam)
GFF3
Variant call format (PyVCF)
petlx
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Index
A
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C
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D
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F
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G
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I
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M
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P
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R
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T
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U
A
appendhdf5() (in module petlx.hdf5)
C
collapsedintervals() (in module petlx.interval)
create_table() (in module petlx.sql)
D
display() (in module petlx.ipython)
displayall() (in module petlx.ipython)
drop_table() (in module petlx.sql)
F
facetintervallookup() (in module petlx.interval)
facetintervallookupone() (in module petlx.interval)
facetintervalrecordlookup() (in module petlx.interval)
facetintervalrecordlookupone() (in module petlx.interval)
fromarray() (in module petlx.array)
fromdataframe() (in module petlx.dataframe)
fromgff3() (in module petlx.gff3)
fromhdf5() (in module petlx.hdf5)
fromhdf5sorted() (in module petlx.hdf5)
fromtabix() (in module petlx.tabix)
fromvcf() (in module petlx.vcf)
fromxls() (in module petlx.xls)
fromxlsx() (in module petlx.xlsx)
G
gff3join() (in module petlx.gff3)
gff3leftjoin() (in module petlx.gff3)
gff3lookup() (in module petlx.gff3)
I
intervaljoin() (in module petlx.interval)
intervaljoinvalues() (in module petlx.interval)
intervalleftjoin() (in module petlx.interval)
intervallookup() (in module petlx.interval)
intervallookupone() (in module petlx.interval)
intervalrecordlookup() (in module petlx.interval)
intervalrecordlookupone() (in module petlx.interval)
intervalsubtract() (in module petlx.interval)
M
make_create_table_statement() (in module petlx.sql)
make_sqlalchemy_column() (in module petlx.sql)
make_sqlalchemy_table() (in module petlx.sql)
meltsamples() (in module petlx.vcf)
P
petlx (module)
petlx.array (module)
petlx.dataframe (module)
petlx.gff3 (module)
petlx.hdf5 (module)
petlx.interval (module)
petlx.ipython (module)
petlx.sql (module)
petlx.tabix (module)
petlx.vcf (module)
petlx.xls (module)
petlx.xlsx (module)
R
recordtree() (in module petlx.interval)
recordtrees() (in module petlx.interval)
T
toarray() (in module petlx.array)
todataframe() (in module petlx.dataframe)
todb() (in module petlx.sql)
tohdf5() (in module petlx.hdf5)
torecarray() (in module petlx.array)
toxls() (in module petlx.xls)
toxlsx() (in module petlx.xlsx)
tupletree() (in module petlx.interval)
tupletrees() (in module petlx.interval)
U
unpackcall() (in module petlx.vcf)
unpackinfo() (in module petlx.vcf)
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