GFF3¶
- petlx.gff3.gff3lookup(features, facet='seqid')[source]¶
Build a GFF3 feature lookup based on interval trees. See also petlx.interval.facetintervallookup().
New in version 0.2.
- petlx.gff3.gff3join(table, features, seqid='seqid', start='start', end='end', proximity=1)[source]¶
Join with a table of GFF3 features. See also petlx.interval.intervaljoin().
New in version 0.2.
- petlx.gff3.gff3leftjoin(table, features, seqid='seqid', start='start', end='end', proximity=1)[source]¶
Left join with a table of GFF3 features. See also petlx.interval.intervalleftjoin().
New in version 0.2.